DNA/RNA Sequence Manager App - Django

Product Description

Django web application to manage DNA sequences and to visualize a force-directed RNA structures.

This Django web application can only be used locally on your computer.

It allows to manage DNA sequences and store them in a SQLite database

Product Content:

Buying this product you'll get a requirements file in '.txt.' format and the Django Sequence Manager web application in a '.zip' file:

• x1 '.zip' file with the entire SequenceManager project.
• x1 '.txt' file as a Python dependencies requirements file.

DNA/RNA Sequence Manager Tool

Tool Description

Django web application to manage DNA sequences, making possible to:

• introduce DNA sequence as a text sequence composed with the nucleotide letters (ATCG) making possible to compute and calculate its reverse and reverse-complement sequences fast and easily
• Visualize a force-directed RNA secondary structures, by introducing a DNA sequence and the desired structure, making possible to create the desired structure for the correct sequence..

Tool Functionalities

What you can do with this web application are:

About DNA:

• Create, Read, Update and Delete DNA sequences
• DNA reverse sequence.
• DNA reverse-complement sequence.

About RNA:

• RNA secondary structure.
• Interactive 2D forced-directed RNA structure visualization. Zoom, PAN, Lazo or select area are some way examples to interact with the plot.
• Downloadable forced-directed RNA structure plot as image in different formats: PNG, SVG, JPG, JPEG.

Tool Applications

Useful for any business, brands, applications, scientists or programmers that wants to compute DNA sequence results from a given sequence, or that wants to represent a downloadable forced-directed RNA structure fast an easily.

Quick start:

Follow the next steps:

1. Install the 'requirements.txt' file.
2. Place your command-line prompt inside the main project folder 'SequenceManager', where the 'manage.py' file is and migrate the models to the database by typing: python3 manage.py migrate.
3. Execute the project typing: python3 manage.py runserver.

Packages needed

The next Python packages (included in the requirements file) are needed for the application usage:

• Django
• dash
• dash-bio==1.0.1
• django_plotly_das

Get it once and use it forever!

Be careful:

This software is ready to execute and use locally on your computer as a normal Django project that is in development. Tested only on Linux OS.

Make sure you know how to install and run a Django project locally on your computer.